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| Term | ||
| 1. | Asa Shinn Mercer (Temporary President) | 1861-63 |
| 2. | William Edward Barnard | 1863-66 |
| 3. | George Fred Whitworth | 1866-67 |
| UNIVERSITY CLOSED | 1867-69 | |
| 4. | John Henry Hall | 1869-72 |
| 5. | Eugene Kincaid Hill | 1872-74 |
| UNIVERSITY CLOSED | 1874 | |
| 6. | George Fred Whitworth | 1874-76 |
| UNIVERSITY CLOSED | 1876 | |
| 7. | Alexander Jay Anderson | 1877-82 |
| 8. | Leonard Jackson Powell | 1882-87 |
| 9. | Thomas Milton Gatch | 1887-95 |
| 10. | Mark Walrod Harrington | 1895-97 |
| 11. | William Franklin Edwards (eight months) | 1897 |
| 12. | Charles Francis Reeves (Acting President, one year) | 1897-98 |
| 13. | Frank Pierrepont Graves | 1889-1902 |
| 14. | Thomas Franklin Kane | 1902-14 |
| 15. | Henry Landes (Acting President, one year) | 1914-15 |
| 16. | Henry Suzzallo | 1915-26 |
| 17. | David Thomson (Acting President, one year) | 1926-27 |
| 18. | Matthew Lyle Spencer | 1927-33 |
| 19. | Hugo Winkenwerder (Acting President, one year) | 1933-34 |
| 20. | Lee Paul Sieg | 1934-46 |
| 21. | Raymond B. Allen | 1946-51 |
| 22. | H.P. (Dick) Everest (Acting President, six months) | 1952 |
| 23. | Henry Schmitz | 1952-58 |
| 24. | Charles E. Odegaard | 1958-73 |
| 25. | Philip W. Cartwright (Acting President, six months) | 1973-74 |
| 26. | John R. Hogness | 1974-79 |
| 27. | William P. Gerberding | 1979-95 |
| 28. | Richard L. McCormick | 1996---- |
Source: Office of the President.